The fungal species associated with leaves and twigs from stands of Populus x euramericana in northern Spain were studied with the aim of evaluating the effects of several factors on endophytic communities in these plantations. Endophyte assemblages were analysed in 12 poplar plantations (clone I-214), chosen according to a factorial scheme with two factors: age and site quality. Crown condition, dendrometric variables and foliar nutrients were recorded in each sampled tree to evaluate their effects on endophytic communities. Fungal species richness and relative isolation frequency (RIF) were higher in young stands than in adult stands. Moreover, the age-related differences depended on site quality, with the lowest richness levels observed in adult stands located in poor sites. At stand level, endophyte assemblages varied among stands according to site quality and, to a lesser extent, stand age. On the other hand, crown discoloration, total height and foliar concentrations of iron and zinc may be key indicators of endophytic communities in poplar plantations, at tree level.