Current issue: 53(2)

Under compilation: 53(3)

Impact factor 1.683
5-year impact factor 1.950
Silva Fennica 1926-1997
1990-1997
1980-1989
1970-1979
1960-1969
Acta Forestalia Fennica
1953-1968
1933-1952
1913-1932

Articles containing the keyword 'SSR markers'.

Category: Research article

article id 1663, category Research article
Marta Kempf, Monika Konnert. (2016). Distribution of genetic diversity in Fagus sylvatica at the north-eastern edge of the natural range. Silva Fennica vol. 50 no. 4 article id 1663. https://doi.org/10.14214/sf.1663
Highlights: European beech at the north-eastern edge of its natural range in Poland have a high level of genetic variation, similar to the populations from Central Europe; The differences between the beech provenances from the two centres in Poland, which were previously identified on the basis of pollen analyses and phenotypic traits, have now been genetically confirmed.

An understanding of the genetic variation of the beech, especially at the edge of its natural distribution, is essential because of the change in natural distribution of the species resulting from changing climatic conditions. The main aim of the study was to determine the level of genetic diversity of European beech at the north-eastern edge of its natural range. The other aim was to check the genetic variation of beech from the two centres, the north and the south of Poland, which were identified in previous findings based on pollen analyses and phenotypic traits. The research material was the progeny of twelve beech provenances. The genetic structure of the populations was determined by ten highly variable microsatellite DNA loci. The results confirmed the high genetic diversity of beech at the north-eastern edge of its natural distribution, which infers the probability of their good adaptation to the changing climate and an extension of the range. Genetic analyses confirmed the existence of two genetic centres for beech in Poland. The populations from south-eastern Poland had a slightly higher diversity than the populations from the north-western area, which may indicate that the colonisation of Poland occurred by two routes. The results are important for creating the borders of the provenance regions and for limiting the transfer of seeds and seedlings. The choice of forest reproductive material, based on the knowledge of genetic diversity, is very important for the stability of future forests.

  • Kempf, Department of Genetics and Forest Tree Breeding, Faculty of Forestry, University of Agriculture in Krakow, Al. 29-listopada 46, 31–425 Krakow ORCID ID:E-mail: m.kempf@ur.krakow.pl (email)
  • Konnert, Bavarian Office for Forest Seeding and Planting, Forstamtsplatz 1, 83317 Teisendorf, Germany ORCID ID:E-mail: monika.konnert@asp.bayern.de
article id 1236, category Research article
Monika Litkowiec, Beata P. Plitta-Michalak, Andrzej Lewandowski, Grzegorz Iszkuło. (2015). Homogenous genetic structure in populations of Taxus baccata with varied proportions of male and female individuals. Silva Fennica vol. 49 no. 4 article id 1236. https://doi.org/10.14214/sf.1236
Highlights: Polish populations of Taxus baccata showed a high level of genetic diversity within populations and moderate genetic differentiation between them after nSSR marker testing; No significant differences in the genetic variation between T. baccata male and female individuals were observed, and microsatellite loci neutrality was verified; Determining the sex ratio in T. baccata populations is not essential to develop a clear understanding of genetic differentiation and diversity within and between populations of this species.

English yew (Taxus baccata L.) is a strictly outcrossing and dioecious species whose populations are small and isolated. It is known that sex ratios may vary in natural populations due to local environmental conditions or stochastic events. However, unbalanced sex ratios may have negative impacts on genetic diversity through enhanced genetic drift and inbreeding. The present study represents one of the first attempts to compare the genetic variation at microsatellite loci within and between populations with different gender proportions. Our results indicated that there were no significant correlations between sex ratio and the extent of genetic variation in different populations. All populations exhibited high levels of genetic diversity. Additionally, the genetic structure was characterized separately in male and female individuals. Statistical analyses of the set estimators describing the genetic structure of male and female individuals of T. baccata revealed no significant differences between the two groups. Molecular analysis verified that microsatellite nuclear loci neutrality developed for T. baccata, as there were no significant differences in the genetic variation between males and females and no evidence for any outlier loci using coalescent and hierarchical Bayesian simulations. The results demonstrate that ignoring biased sex ratios in T. baccata populations had no effect on the assessment of genetic differentiation and genetic diversity within and between populations of this species. These results are discussed with regards to the practical application of molecular markers in conservation programs.

  • Litkowiec, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland ORCID ID:E-mail: mlit@man.poznan.pl (email)
  • Plitta-Michalak, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland ORCID ID:E-mail: beata-plitta@wp.pl
  • Lewandowski, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland ORCID ID:E-mail: alew@man.poznan.pl
  • Iszkuło, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland & University of Zielona Góra, Faculty of Biological Sciences, Prof. Z. Szafrana 1, 65-516 Zielona Góra, Poland ORCID ID:E-mail: iszkulo@man.poznan.pl
article id 1073, category Research article
Pedro Sánchez-Gómez, Juan F. Jiménez, Juan B. Vera, Francisco J. Sánchez-Saorín, Juan F. Martínez, Joseph Buhagiar. (2013). Genetic structure of Tetraclinis articulata, an endangered conifer of the western Mediterranean basin. Silva Fennica vol. 47 no. 5 article id 1073. https://doi.org/10.14214/sf.1073
Highlights: The employment of ISSR molecular markers has shown moderate genetic diversity and high genetic differentiation in Tetraclinis articulata; Genetic structure of populations seems to be influenced by the anthropogenic use of this species since historical times, or alternatively, by the complex palaeogeographic history of the Mediterranean basin; Results could be used to propose management policies for conservation of populations.
Tetraclinis articulata (Vahl) Masters is a tree distributed throughout the western Mediterranean basin. It is included in the IUCN (International Union for Conservation of Nature) red list, and protected by law in several of the countries where it grows. In this study we examined the genetic diversity and genetic structure of 14 populations of T. articulata in its whole geographic range using ISSR (inter simple sequence repeat) markers. T. articulata showed moderate genetic diversity at intrapopulation level and high genetic differentiation. The distribution of genetic diversity among populations did not exhibit a linear pattern related to geographic distances, since all analyses (principal coordinate analysis, Unweighted pair group method with arithmetic mean dendrogram and Bayesian structure analysis) revealed that spanish population grouped with Malta and Tunisia populations. Although it is possible that T. articulata earlier was natural in Southeast Spain, results suggest that the current population has been reintroduced into the Iberian Peninsula in historical times, due to its utility in mining and building. In addition, results could be used to propose management guidelines for the conservation of T. articulata.
  • Sánchez-Gómez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain ORCID ID:E-mail: psgomez@um.es
  • Jiménez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain ORCID ID:E-mail: fjimenez@um.es (email)
  • Vera, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain ORCID ID:E-mail: jbveraperez@gmail.com
  • Sánchez-Saorín, Dirección General de Medio Ambiente, Consejería de Presidencia de la Región de Murcia, C/ Catedrático Eugenio Úbeda nº3, E-30071 Murcia, Spain ORCID ID:E-mail: fjavier.sanchez3@carm.es
  • Martínez, Dirección General de Medio Ambiente, Consejería de Presidencia de la Región de Murcia, C/ Catedrático Eugenio Úbeda nº3, E-30071 Murcia, Spain ORCID ID:E-mail: juanf.martinez@carm.es
  • Buhagiar, Argotti Herbarium and Gardens (UOM), Triq Vincenzo Bugeja Floriana VLT 16, Malta ORCID ID:E-mail: joseph.buhagiar@um.edu.mt

Category: Research note

article id 1674, category Research note
Nevenka Ćelepirović, Monika Karija Vlahović, Aikaterini Dounavi, Mladen Ivanković. (2016). Optimizations of high throughput multiplex polymerase chain reaction with simple sequence repeat markers for genotyping of common walnut populations (Juglans regia L.). Silva Fennica vol. 50 no. 5 article id 1674. https://doi.org/10.14214/sf.1674
Highlights: We combined eleven SSR markers in one multiplex PCR to make faster and cost effective amplification of the common walnut DNA from Croatia; Genetic variation of common walnut from Croatia was moderate at analyzed SSR loci; The resultant multiplex PCR could be used for genotyping of common walnut populations.

Multiplex polymerase chain reaction (PCR) allows amplification of two or more pair of primers in parallel for amplification of multiple target sequences in a single reaction tube. In this study, we combined existing simple sequence repeat (SSR) markers (nuclear microsatellites) in the novel combination of multiplex PCR to study the population genetics of common walnut from Croatia. From twenty one tested SSR markers, eleven produced satisfactory results in one multiplex PCR. Population genetic results achieved from 15 samples of Croatian common walnut showed moderate genetic variability (average value: He 0.473; Ho 0.568). Our multiplex PCR allowed cost effective work concerning chemicals, plastic ware, device, and working time producing optimal results. The optimized multiplex PCR represented the best combination of eleven SSR primers for genotyping common walnut in a single PCR reaction.

  • Ćelepirović, Division of Genetics, Forest Tree Breeding and Seed Science, Croatian Forest Research Institute, Jastrebarsko, Croatia ORCID ID:E-mail: celepirovic.nevenka@gmail.com (email)
  • Karija Vlahović, DNA Laboratory, Department of Forensic Medicine&Criminology, School of Medicine, University of Zagreb, Zagreb, Croatia ORCID ID:E-mail: monika.karija.vlahovic@mef.hr
  • Dounavi, Department of Forest Protection, Forest Research Insitute of Baden-Württemberg, Wonnhaldesttr. 4, 79100 Freiburg, Germany ORCID ID:E-mail: aikaterini.dounavi@forst.bwl.de
  • Ivanković, Division of Genetics, Forest Tree Breeding and Seed Science, Croatian Forest Research Institute, Jastrebarsko, Croatia ORCID ID:E-mail: mladeni@sumins.hr

Register
Click this link to register for Silva Fennica submission and tracking system.
Log in
If you are a registered user, log in to save your selected articles for later access.
Contents alert
Sign up to receive alerts of new content
Your selected articles

Committee on Publication Ethics A Trusted Community-Governed Archive