Jonas R. Coussement, Kathy Steppe, Peter Lootens, Isabel Roldán-Ruiz, Tom De Swaef. (2018). A flexible geometric model for leaf shape descriptions with high accuracy. Silva Fennica vol. 52 no. 2 article id 7740. https://doi.org/10.14214/sf.7740

Keywords: image processing; leaf contour; leaf shape; shape function; digitising; tree leaf shape

Highlights: A method for assessing leaf shape for 3D plant models is proposed; The model is highly flexible and fits a large variety of shapes; It allows analysis of shape differences within and between leaf datasets.

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Accurate assessment of canopy structure is crucial in studying plant-environment interactions. The advancement of functional-structural plant models (FSPM), which incorporate the 3D structure of individual plants, increases the need for a method for accurate mathematical descriptions of leaf shape. A model was developed as an improvement of an existing leaf shape algorithm to describe a large variety of leaf shapes. Modelling accuracy was evaluated using a spatial segmentation method and shape differences were assessed using principal component analysis (PCA) on the optimised parameters. Furthermore, a method is presented to calculate the mean shape of a dataset, intended for obtaining a representative shape for modelling purposes. The presented model is able to accurately capture a large range of single, entire leaf shapes. PCA illustrated the interpretability of the parameter values and allowed evaluation of shape differences. The model parameters allow straightforward digital reconstruction of leaf shapes for modelling purposes such as FSPMs.

Coussement, Plant Sciences Unit, Institute for Agricultural and Fisheries Research (ILVO), Caritasstraat 39, B-9090 Melle, Belgium; Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium E-mail: jonas.coussement@ilvo.vlaanderen.be
Steppe, Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium E-mail: kathy.steppe@ugent.be
Lootens, Plant Sciences Unit, Institute for Agricultural and Fisheries Research (ILVO), Caritasstraat 39, B-9090 Melle, Belgium E-mail: peter.lootens@ilvo.vlaanderen.be
Roldán-Ruiz, Plant Sciences Unit, Institute for Agricultural and Fisheries Research (ILVO), Caritasstraat 39, B-9090 Melle, Belgium; Department of Plant Biotechnology and Bioinformatics, Faculty of Sciences, Ghent University, Technologiepark Zwijnaarde 927, B-9052 Zwijnaarde, Belgium E-mail: isabel.roldan-ruiz@ilvo.vlaanderen.be
De Swaef, Plant Sciences Unit, Institute for Agricultural and Fisheries Research (ILVO), Caritasstraat 39, B-9090 Melle, Belgium E-mail: tom.deswaef@ilvo.vlaanderen.be

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