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Articles containing the keyword 'mixed-effects model'

Category : Climate resilient and sustainable forest management – Research article

article id 23042, category Climate resilient and sustainable forest management – Research article
Johanna Jääskeläinen, Lauri Korhonen, Mikko Kukkonen, Petteri Packalen, Matti Maltamo. (2024). Individual tree inventory based on uncrewed aerial vehicle data: how to utilise stand-wise field measurements of diameter for calibration? Silva Fennica vol. 58 no. 3 article id 23042. https://doi.org/10.14214/sf.23042
Keywords: laser scanning; calibration; mixed-effects model; single-tree detection
Highlights: A practical scheme to improve the accuracy of predicted tree and stand attributes in an uncrewed aerial vehicle based individual tree inventory; Accuracy was considerably improved with data from 2–4 sample trees from the target stand; Calibrated existing models and the construction of local models performed equally well; The laborious task of constructing a local model can be avoided by using a calibrated transferred model.
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Uncrewed aerial vehicles (UAV) have great potential for use in forest inventories, but in practice they can be expensive for relatively small inventory areas as a large number of field measurements are needed for model construction. One proposed solution is to transfer previously constructed models to a new inventory area and to calibrate these with a small number of local field measurements. Our objective was to compare calibration of general models and the construction of new models to determine the best approach for UAV-based forest inventories. Our material included field measurements and UAV-based laser scanning data, from which individual trees were automatically identified. A general mixed-effects model for diameter at breast height (DBH) had been formulated earlier based on data from a geographically wider area. It was calibrated to the study area with field measurements from 2–10 randomly selected calibration trees. The calibrated diameters were used to calculate the diameter of a basal area median tree (DGM), tree volumes, and the volume of all trees at plot-level. Next, new DBH-models were formulated based on the 2–10 randomly selected trees and calibrated with plot-level random effects estimated during model construction. Finally, plot-specific height-diameter regression models were formulated by randomly selecting 10 trees from each plot. Calibration reduced the prediction errors of all variables. An increase in the number of calibration trees decreased error rates by 1–6% depending on the variable. Calibrated predictions from the general mixed-effects model were similar to the separately formulated mixed-effects models and plot-specific regression models.

Category : Research article

article id 10544, category Research article
Lars Sprengel, Heinrich Spiecker, Shuirong Wu. (2022). Two subject specific modelling approaches to construct base-age invariant polymorphic site index curves with varying asymptotes. Silva Fennica vol. 56 no. 1 article id 10544. https://doi.org/10.14214/sf.10544
Keywords: generalized algebraic difference approach; stem analysis; dummy variable approach; gnls; nonlinear mixed-effects models; nlme; Zhongtiaoshan forest region
Highlights: Base-age invariant families of height growth curves with polymorphism and varying asymptotes are presented for the seven economically most important tree species in Zhongtiaoshan forest region, China; The nonlinear fixed-effects approach outperforms the nonlinear mixed-effects approach according to the AIC, but according to RMSE and bias these results are not fully supported.
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For constructing growth and yield models the concept of site index as measure of productivity is crucial. Here, we use nonlinear mixed-effects models (NLME) with random individual effects and nonlinear models with dummy variables as fixed individual effects (NLFE) to fit mechanistic growth functions to stem analysis data of the economically most important tree species in Zhongtiaoshan forest region, China. The Richards and Lundqvist function are formulated into five dynamic equations (R1, R2, L1, L2 and L3) applying the generalized algebraic difference approach (GADA), which inherit polymorphism, varying asymptotes and base-age invariance. According to Akaike information criterion the R1 model as NLFE fits height growth data of Pinus tabuliformis Carrière, Pinus armandii Franch., Quercus liaotungensis Koidz., Quercus aliena Blume and Betula platyphylla Sukaczev best, while for Quercus variabilis Blume R2 as NLFE fits height growth data best. For Larix principis-rupprechtii Mayr L1 as NLME has been selected as best model, as R1 and R2 both as NLFE and NLME are not extrapolating the comparably short length of height growth data well enough. However, according to the root mean square error and bias differences between model fits of both the selected equation and the chosen model fitting approach are not so clear. Presented families of height growth curves serve as planning tools to identify site index and therefore assess productivity of forest stands in the studied region. A direct comparison of the productivity of forest stands of the same tree species is possible due to base-age invariance of the selected models.

  • Sprengel, Chair of Forest Growth and Dendroecology, Albert-Ludwigs-University Freiburg, Tennenbacher Str. 4, 79106 Freiburg, Germany ORCID https://orcid.org/0000-0002-6332-7911 E-mail: lars.sprengel@iww.uni-freiburg.de (email)
  • Spiecker, Chair of Forest Growth and Dendroecology, Albert-Ludwigs-University Freiburg, Tennenbacher Str. 4, 79106 Freiburg, Germany E-mail: instww@uni-freiburg.de
  • Wu, Research Institute of Forest Policy and Information, Chinese Academy of Forestry, No. 1 Dongxiaofu, Haidian District, Beijing 100091, China E-mail: shuirongwu@126.com
article id 10612, category Research article
Daesung Lee, Jouni Siipilehto, Jari Hynynen. (2021). Models for diameter distribution and tree height in hybrid aspen plantations in southern Finland. Silva Fennica vol. 55 no. 5 article id 10612. https://doi.org/10.14214/sf.10612
Keywords: Näslund’s height curve; Weibull distribution; parameter recovery; Populus tremula × P. tremuloides; clonal plantation; nonlinear mixed-effects model
Highlights: Parameter recovery method for the Weibull function fitted diameter distributions well by means of sum and mean forest stand characteristics for hybrid aspen plantations; Arithmetic and weighted mean diameters performed better for the recovery method than the corresponding median diameters; Two alternative Näslund’s height curve models with stand characteristics and tree dbh predictors provided unbiased tree height predictions.
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Hybrid aspen (Populus tremula L. × P. tremuloides Michx.) is known with outstanding growth rate and some favourable wood characteristics, but models for stand management have not yet been prepared in northern Europe. This study introduces methods and models to predict tree dimensions, diameter at breast height (dbh) and tree height for a hybrid aspen plantation using data from repeatedly measured permanent sample plots established in clonal plantations in southern Finland. Dbh distributions using parameter recovery method for the Weibull function was used with Näslund’s height curve to model tree heights. According to the goodness-of-fit statistics of Kolmogorov-Smirnov and the Error Index, the arithmetic mean diameter (D) and basal area-weighted mean diameter (DG) provided more stable parameter recovery for the Weibull distribution than the median diameter (DM) and basal area-weighted median diameter (DGM), while DG showed the best overall fit. Thus, Näslund’s height curve was modelled using DG with Lorey’s height (HG), age, basal area (BA), and tree dbh (Model 1). Also, Model 2 was tested using all predictors of Model 1 with the number of trees per ha (TPH). All predictors were shown to be significant in both Models, showing slightly different behaviour. Model 1 was sensitive to the mean characteristics, DG and HG, while Model 2 was sensitive to stand density, including both BA and TPH as predictors. Model 1 was considered more reasonable to apply based on our results. Consequently, the parameter recovery method using DG and Näslund’s models were applicable for predicting tree diameter and height.

  • Lee, Natural Resources Institute Finland (Luke), Natural resources, Latokartanonkaari 9, FI-00790 Helsinki, Finland ORCID https://orcid.org/0000-0003-1586-9385 E-mail: daesung.lee@luke.fi (email)
  • Siipilehto, Natural Resources Institute Finland (Luke), Natural resources, Latokartanonkaari 9, FI-00790 Helsinki, Finland E-mail: jouni.siipilehto@luke.fi
  • Hynynen, Natural Resources Institute Finland (Luke), Natural resources, Vipusenkuja 5, FI-57200 Savonlinna, Finland ORCID https://orcid.org/0000-0002-9132-8612 E-mail: jari.hynynen@luke.fi
article id 10351, category Research article
Karol Bronisz, Michał Zasada. (2020). Taper models for black locust in west Poland. Silva Fennica vol. 54 no. 5 article id 10351. https://doi.org/10.14214/sf.10351
Keywords: taper; Robinia pseudoacacia; mixed-effects models; section diameter over and under bark; volume prediction
Highlights: Seven taper models with different numbers of estimated parameters were analysed; Section diameter and volume was modelled using fixed and mixed-effects modelling approaches; The variable-form taper model with eight estimated parameters fitted the data the best; The lowest error for volume prediction was achieved for the fixed-effects taper model.
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The diameter at any point on a stem and tree volume are some of the most important types of information used in forest management planning. One of the methods to predict the diameter at any point on a stem is to develop taper models. Black locust (Robinia pseudoacacia L.) occurs in almost all forests in Poland, with the largest concentration in the western part of the country. Using empirical data obtained from 13 black locust stands (48 felled trees), seven taper models with different numbers of estimated parameters were analysed for section diameters both over and under bark using fixed and mixed-effects modelling approaches. Assuming a lack of additional measurements, the best fitted taper models were used for the prediction of over bark volume using both methods. The predicted volume was compared with the results from different volume equations available for black locust. The variable-form taper model with eight estimated parameters fitted the data the best. The lowest root mean square error for volume prediction was achieved for the elaborated fixed-effects taper model (0.0476), followed by the mixed-effects taper model (0.0489). At the same time, the difference between the volume relative errors achieved based on the taper models does not differ significantly from the results obtained using the volume equations already available for black locust (two of the three analysed).

  • Bronisz, Institute of Forest Sciences, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, PL 02-776 Warsaw, Poland E-mail: karol.bronisz@wl.sggw.pl (email)
  • Zasada, Institute of Forest Sciences, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, PL 02-776 Warsaw, Poland ORCID https://orcid.org/0000-0002-4881-296X E-mail: Michal.Zasada@wl.sggw.pl
article id 10006, category Research article
Matti Maltamo, Tomi Karjalainen, Jaakko Repola, Jari Vauhkonen. (2018). Incorporating tree- and stand-level information on crown base height into multivariate forest management inventories based on airborne laser scanning. Silva Fennica vol. 52 no. 3 article id 10006. https://doi.org/10.14214/sf.10006
Keywords: forest inventory; LIDAR; alpha shape; crown height; nearest neighbor; mixed-effects model
Highlights: The most accurate tree-level alternative is to include crown base height (CBH) to nearest neighbour imputation; Also mixed-effects models can be applied to predict CBH using tree attributes and airborne laser scanning (ALS) metrics; CBH prediction can be included with an accuracy of 1–1.5 m to forest management inventory applications.
Abstract | Full text in HTML | Full text in PDF | Author Info

This study examines the alternatives to include crown base height (CBH) predictions in operational forest inventories based on airborne laser scanning (ALS) data. We studied 265 field sample plots in a strongly pine-dominated area in northeastern Finland. The CBH prediction alternatives used area-based metrics of sparse ALS data to produce this attribute by means of: 1) Tree-level imputation based on the k-nearest neighbor (k-nn) method and full field-measured tree lists including CBH observations as reference data; 2) Tree-level mixed-effects model (LME) prediction based on tree diameter (DBH) and height and ALS metrics as predictors of the models; 3) Plot-level prediction based on analyzing the computational geometry and topology of the ALS point clouds; and 4) Plot-level regression analysis using average CBH observations of the plots for model fitting. The results showed that all of the methods predicted CBH with an accuracy of 1–1.5 m. The plot-level regression model was the most accurate alternative, although alternatives producing tree-level information may be more interesting for inventories aiming at forest management planning. For this purpose, k-nn approach is promising and it only requires that field measurements of CBH is added to the tree lists used as reference data. Alternatively, the LME-approach produced good results especially in the case of dominant trees.

  • Maltamo, University of Eastern Finland, School of Forest Sciences, P.O. Box 111, FI-80101 Joensuu, Finland E-mail: matti.maltamo@uef.fi (email)
  • Karjalainen, University of Eastern Finland, School of Forest Sciences, P.O. Box 111, FI-80101 Joensuu, Finland E-mail: tomimkarjalainen@gmail.com
  • Repola, Natural Resources Institute of Finland (Luke), Natural resources, Eteläranta 55, FI-96300 Rovaniemi, Finland E-mail: jaakko.repola@luke.fi
  • Vauhkonen, Natural Resources Institute of Finland (Luke), Bioeconomy and environment, Yliopistokatu 6, 80100 Joensuu, Finland E-mail: jari.vauhkonen@luke.fi
article id 1087, category Research article
Ilkka Korpela, Lauri Mehtätalo, Lauri Markelin, Anne Seppänen, Annika Kangas. (2014). Tree species identification in aerial image data using directional reflectance signatures. Silva Fennica vol. 48 no. 3 article id 1087. https://doi.org/10.14214/sf.1087
Keywords: forestry; reflectance calibration; BRDF; mixed-effects modeling; Monte-Carlo simulation
Highlights: Multispectral reflectance data showed a strong and spectrally correlated tree effect; There was no gain in species classification from using species-specific differences of directional reflectance in real data and only a marginal improvement in simulated data; The directional signatures extracted in multiple images are obscured by the intrinsic within-species variation, correlated observations and inherent reflectance calibration errors.
Abstract | Full text in HTML | Full text in PDF | Author Info
Tree species identification using optical remote sensing is challenging. Modern digital photogrammetric cameras enable radiometrically quantitative remote sensing and the estimation of reflectance images, in which the observations depend largely on the reflectance properties of targets. Previous research has shown that there are species-specific differences in how the brightness observed changes when the viewing direction in an aerial image is altered. We investigated if accounting for such directional signatures enhances species classification, using atmospherically corrected, real and simulated multispectral Leica ADS40 line-camera data. Canopy in direct and diffuse illumination were differentiated and species-specific variance-covariance structures were analyzed in real reflectance data, using mixed-effects modeling. Species classification simulations aimed at elucidating the level of accuracy that can be achieved by using images of different quality, number and view-illumination geometry. In real data, a substantial variance component was explained by tree effect, which demonstrates that observations from a tree correlate between observation geometries as well as spectrally. Near-infrared band showed the strongest tree effect, while the directionality was weak in that band. The gain from directional signatures was insignificant in real data, while simulations showed a potential gain of 1–3 percentage points in species classification accuracy. The quality of reflectance calibration was found to be important as well as the image acquisition geometry. We conclude that increasing the number of image observations cancels out random observation noise and reflectance calibration errors, but fails to eliminate the tree effect and systematic calibration inaccuracy. Directional reflectance constitutes a marginal improvement in tree species classification.
  • Korpela, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FI-00014, Finland E-mail: ilkka.korpela@helsinki.fi (email)
  • Mehtätalo, Faculty of Science and Forestry, University of Eastern Finland, P.O. Box 111, FI-80101 Joensuu, Finland E-mail: lauri.mehtatalo@uef.fi
  • Markelin, Department of Remote Sensing and Photogrammetry, Finnish Geodetic Institute, P.O. Box 15, FI-02431 Masala, Finland E-mail: lauri.markelin@fgi.fi
  • Seppänen, Faculty of Science and Forestry, University of Eastern Finland, P.O. Box 111, FI-80101 Joensuu, Finland E-mail: anne.seppanen@arbonaut.com
  • Kangas, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FI-00014, Finland E-mail: annika.kangas@helsinki.fi

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